ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers
MIT License
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Backport SSW fix #295

Closed marcelm closed 1 year ago

marcelm commented 1 year ago

SSW sometimes computes wrong alignments. This has been reported and fixed in https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library/pull/78

This PR backports just makes the same change that was made in that PR.

Our copy of SSW still has some other bugs that have been fixed in more recent versions of SSW. I’ll look into updating SSW.

Closes #294

marcelm commented 1 year ago

Closing in favor of #296