Figure out why no. of randstrobes is not the same as no. of syncmers

ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers

MIT License

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Figure out why no. of randstrobes is not the same as no. of syncmers #308

Closed marcelm closed 1 year ago

marcelm commented 1 year ago

See #307

marcelm commented 1 year ago

The discrepancy comes from the last $w_min$ syncmers in a contig. These do not have a downstream "partner" and therefore no randstrobe is generated for them. See #310