I found this useful for experiments: This adds a --count option to dumpstrobes, which will make it count all randstrobes (or syncmers if --syncmers is also provided).
This can also be used for benchmarking the RandstrobeGenerator and SyncmerIterator (only the overhead from reading the reference has to be subtracted from the measured runtime).
ksahlin
commented
1 year ago
I found this useful for experiments: This adds a
--countoption todumpstrobes, which will make it count all randstrobes (or syncmers if--syncmersis also provided).This can also be used for benchmarking the
RandstrobeGeneratorandSyncmerIterator(only the overhead from reading the reference has to be subtracted from the measured runtime).