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ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers
MIT License
128 stars 16 forks source link

Strobealign gets killed when I try to run/index it #325

Closed lajoycemboning closed 11 months ago

lajoycemboning commented 11 months ago

Hello, recently I tried to run your software but when I try to create an index or directly run the command to map reads to a reference genome it gets killed before completion.

Can you help?

ksahlin commented 11 months ago

Hi @lajoycemboning.

We can help. But you have to provide some more information to do so. Can you please:

  1. attach the error message you get
  2. How much memory do you have? And what is the size of the reference you are mapping to?
ksahlin commented 11 months ago

Also please attach the command you ran strobealign with.

lajoycemboning commented 11 months ago

I was having memory (RAM) issues trying to generate the index but I was able to make it work:) Thanks for reaching out though