ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers
MIT License
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Allow w_min to be zero #338

Closed marcelm closed 9 months ago

marcelm commented 9 months ago

There’s nothing inherently problematic with w_min=0 and, as we see in #272, it even leads to higher accuracy for 50 bp reads.

This requires changing the l parameter from -4 to -3 for 50 bp reads if we want w_min to remain equal to 1 as before.

ksahlin commented 9 months ago

Approved