ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers
MIT License
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Add dumpstrobes --seeds option for writing out the full seed vector #353

Closed marcelm closed 9 months ago

marcelm commented 9 months ago

With this, dumpstrobes --seeds genome.fa dumps the sorted randstrobes vector to standard output in a comma-separated format.

Columns:

I also had to move two functions in index.cpp into an anonymous namespace as otherwise the linker complains about a duplicate name (count_randstrobes exists twice).

ksahlin commented 9 months ago

Thanks! Approved.