An improvement I plan to make for #364 affects the code that outputs the secondary alignments. We didn’t have tests covering that, so this adds a couple.
There’s also a change in here related to how empty reads are encoded in SAM output. samtools insists it should be *, so this is changed here as well.
ksahlin
commented
10 months ago
An improvement I plan to make for #364 affects the code that outputs the secondary alignments. We didn’t have tests covering that, so this adds a couple.
There’s also a change in here related to how empty reads are encoded in SAM output.
samtoolsinsists it should be*, so this is changed here as well.