Do not use --eqx in baseline comparison script

ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers

MIT License

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Do not use --eqx in baseline comparison script #369

Closed marcelm closed 7 months ago

marcelm commented 7 months ago

The use of --eqx was inconsistent so that samdiff would show that the CIGAR string has changed although it was just a change of which operators are used.

I will merge this as soon as the tests pass.