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ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers
MIT License
128 stars 16 forks source link

end-to-end alignment with strobalign? #408

Closed fplazaonate closed 3 months ago

fplazaonate commented 3 months ago

Hi! Thanks for developping strobalign. I have just tested it and it is incredibly fast.

I was wondering if there is a way to perform end-to-end alignment (no soft clipping) with strobalign?

marcelm commented 3 months ago

Hi, there was a similar question in #399, can you please read through that conversation and see whether that answers your question?