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ksahlin
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ultra
Long-read splice alignment with high accuracy
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Ultra index failed
#26
Yangliu9ReviR
closed
1 month ago
1
fastq, samfile QUAL field fixed.
#25
mahmudsami
closed
1 month ago
1
Failed in building index
#24
FadelBerakdar
closed
3 months ago
3
Can I use ultra to align est to references
#23
xiekunwhy
opened
6 months ago
1
UnboundLocalError: local variable 'i' referenced before assignment
#22
rkworkhelp1
opened
8 months ago
4
Bug with uLTRA align : TypeError: bad argument type for built-in operation
#21
laetitiarialland
closed
1 year ago
3
Error: invalid feature coordinates (end<start!) at line:
#20
5Tony
opened
1 year ago
1
Can not access local variable 'read_mems_tmp' when using --use_NAM_seeds
#19
FadelBerakdar
closed
1 year ago
2
Genomes FASTA/GTF files needed to run the evaluation
#18
FadelBerakdar
closed
1 year ago
4
Out of bound reads
#17
sguizard
closed
2 years ago
13
a bug of `--alignment_threshold`
#16
ATPs
closed
2 years ago
1
Controlling (high) uLTRA RAM usage
#15
pre-mRNA
opened
2 years ago
1
BUG -4294967296
#14
sguizard
opened
2 years ago
8
Cigar is None
#13
martinhaagmans
opened
2 years ago
2
Mapping with uLTRA without GTF?
#12
unique379r
closed
2 years ago
3
CIGAR string starts/ends with N
#11
zhixue
closed
2 years ago
7
ultra installation and run error
#10
unique379r
closed
2 years ago
7
Python bindings?
#9
cnk113
opened
2 years ago
1
Non-absolute paths don't resolve
#8
lassefolkersen
closed
2 years ago
5
uLTRA + SQANTI3
#7
FJPardoPalacios
closed
3 years ago
2
How to control minimap 2 parameters during uLTRA alignment
#6
pre-mRNA
closed
2 years ago
6
KeyError when running test pipeline
#5
DrOllyGomez
closed
3 years ago
3
error when aligning direct RNA data during revcomp script
#4
pre-mRNA
closed
3 years ago
3
If malformatted fastq, uLTRA silently aligns only a subset of reads
#3
ksahlin
opened
3 years ago
0
Alignment outside of contig
#2
MatthiasLienhard
closed
2 years ago
11
unclear/wrong argument description of uLTRA align in help
#1
MatthiasLienhard
closed
3 years ago
4