Closed pileei closed 1 month ago
Hi there, looks like your VCF is not valid because it is missing the header entry for the DP FORMAT field. A quick fix would just be to add it in manually.
Thanks for your answer. I'm new in this field and I don't know how to fix the vcf the way you mentioned.
I added the line ##FORMAT=
I think that I will need to add the DP at the column of the FORMAT in the vcf but I do not know how to do it.
Again, many thanks for your help.
Dear Kieran,
I generated AllSites VCFs using BCFtools as described in the Generating invariant sites VCFs section and when I run pixy I encounter this error:
The header looks like this:
The vcf file first two lines are:
Have you encounter this error before?
Thanks in advance!