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ksamuk / pixy

Software for painlessly estimating average nucleotide diversity within and between populations
https://pixy.readthedocs.io/
MIT License
117 stars 14 forks source link

Haploid VCF #47

Closed Jolvii85 closed 3 years ago

Jolvii85 commented 3 years ago

Hi there,

Does pixy also work on the haploid VCF files? Do I need to convert the VCF or manipulate the output to get the correct results?

Best regards,

Wei

ksamuk commented 3 years ago

Hi Wei,

pixy currently only works with diploid data, apologies! Support for different ploidies is on the list of future improvements.

Cheers,

Kieran

AndreaGuarracino commented 2 years ago

Hi @ksamuk,

any chance of getting feedback from you on how to "hack" Pixy to work on haploid VCF files?

I'm really enjoying your tool, but I need to figure out if it's good enough to use it in its current state on haploid VCF files. I would prefer to properly support haploid samples.