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ksamuk / pixy

Software for painlessly estimating average nucleotide diversity within and between populations
https://pixy.readthedocs.io/
MIT License
115 stars 14 forks source link

csi index #72

Open giuliafrascarelli opened 1 year ago

giuliafrascarelli commented 1 year ago

Hi! First, thank you for the nice program!

I am currently working with lentil WGS data and the vcf cannot be tbi indexed but I found that Pixy does not support the csi index. There is a way to solve the problem or do you have any suggestions?

Thanks! Giulia

ksamuk commented 1 year ago

Hi Giulia, there isn't currently support for .csi indexes, but I'd like to add it in a future update. The only way around this currently would be to split your VCF into smaller chunks and re-index with .tbi.

xiekunwhy commented 3 months ago

Hi,

Also request for csi indexes supporting.

Best, Kun

Jolvii85 commented 2 weeks ago

Hi,

Request for csi index supporting.

Best,

Wei