Version of numpy and htslib doesn't work

ksamuk / pixy

Software for painlessly estimating average nucleotide diversity within and between populations

https://pixy.readthedocs.io/

MIT License

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Version of numpy and htslib doesn't work #82

Closed conJUSTover closed 1 year ago

conJUSTover commented 1 year ago

Thanks for developing pixy! I am currently trying to install it via conda, but I'm coming across a version issue where the newest numpy and htslib libraries are not supported by pixy. Could you please update the README with the versions of these libraries that you initially used to install this correctly? Thanks!

conJUSTover commented 1 year ago

I found the correct versions and pixy is now working for me. Here are the steps I used for install in case others have similar issues:

conda install -c bioconda htslib openssl=1.0
conda install -c conda-forge pixy numpy=1.23.4

ksamuk commented 1 year ago

Thanks, Justin! I am planning on a major update this summer, so this might get resolved as a part of that. Good to have the fix on file for others though, much appreciated.