But apparently it's using only 1, and is correspondingly slow:
(py38) rs155@JLWTLX9FWP july_2023 % bash pixy_run_10jul2023.sh
[pixy] pixy 1.2.7.beta1
[pixy] See documentation at https://pixy.readthedocs.io/en/latest/
[pixy] Validating VCF and input parameters...
[pixy] Checking write access...OK
[pixy] Checking CPU configuration...OK
[pixy] Checking for invariant sites...OK
[pixy] Checking chromosome data...OK
[pixy] Checking intervals/sites...OK
[pixy] Checking sample data...OK
[pixy] All initial checks past!
[pixy] Preparing for calculation of summary statistics: fst
[pixy] Using Weir and Cockerham (1984)'s estimator of FST.
[pixy] Data set contains 2 population(s), 35 chromosome(s), and 25 sample(s)
[pixy] Window size: 1 bp
[pixy] Started calculations at 12:00:27 on 2023-07-12
[pixy] Using 1 out of 10 available CPU cores
[pixy] Processing chromosome/contig chr1_cl...
[pixy] Calculating statistics for region chr1_cl:1-145745323...
Hi,
I'm using pixy 1.2.7.beta1 with Python 3.8 in Mac OS Ventura. I'm asking pixy to use 8 of my 10 cores:
But apparently it's using only 1, and is correspondingly slow:
What might be going on?