ksavell / XPoSE

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create_object01 adding cartridge as prefix to gene names #24

Closed ksavell closed 1 year ago

ksavell commented 1 year ago

I was examining the resulting objects after line 58 and noticed that the gene names under the RNA counts have the cartridge identity as a prefix

Example: c2.X0610005C13Rik

Found this under: data_C2@assays[["RNA"]]@counts@Dimnames[[1]]

ksavell commented 1 year ago

checked the counts_c2, and gene name is correct there

padmashris commented 1 year ago

26 should solve it, @ksavell can you try running it on your system and check too?

ksavell commented 1 year ago

It works, thank you!! :)