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ksavell / XPoSE

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save_vlnplot.R tweaks #30

Closed ksavell closed 1 year ago

ksavell commented 1 year ago

Trying to automate this to produce nCount_RNA and nFeature_RNA for glut and gaba:

image

-set the plot to be a certain size. If testing between glut/gaba there is a difference in cluster name length, and the violins get squished. In the plot it's 1.5 x 1.5 inches. -No labels, was adding them back as correct font, size, and color.

ksavell commented 1 year ago

the plots should be generated in figureS2 script

padmashris commented 1 year ago

@ksavell can you check if i've added everything you need, i've removed the labels and flipped the coordinated. i can add a title to the x axis as a parameter if you'd like - i wasn't too sure if there was a font you wanted for that or if you were okay with the R one.

(latest commit with save_vlnplot.R) and the figureS2 code works fine so far.

padmashris commented 1 year ago

also just fixed up group and sex hexes so those should work too