kschan0214 / sepia

Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
MIT License
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Calling SEPIA commands without the use of the GUI #47

Closed DimitriosGk closed 1 year ago

jprfm commented 1 year ago

Hi Dimitri,

one simple way to learn that is to open the config.m file that is written on you output library after having used the GUI to run serious. The content of that file is exactly what you would need to write on the command line.

For other options for the different algorithms, you can also refer to: https://sepia-documentation.readthedocs.io/en/latest/method/Lookup-table-algorParam.html

Hope this helps,

José

On Sat, 12 Nov 2022, 18:35 Dimitrios Gkotsoulias, @.***> wrote:

Hello,

I would like to ask if there is any way (a tutorial) that we can call sepia commands without the use of the GUI. Something like 'sepia -qsm -in ... -out... -header..... -method.... params etc..' directly on the matlab command line.

Thanks and all the best, Dimitri

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DimitriosGk commented 1 year ago

Thanks a lot Jose! I actually closed the topic before I saw the answer as I realised another fast solution, but your suggestion is excellent and saves effort!

All the best, Dimitri