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kschan0214 / sepia

Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
MIT License
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error while running sepia #5

Closed miladseyfi closed 4 years ago

miladseyfi commented 4 years ago

Hello dear This is the error occurred while trying to run sepia.m :

Undefined function or variable 'SEGUE_dir'. Error in sepia_addpath (line 15) CheckPathValidity(MEDI_dir,STISuite_dir,FANSI_dir,SEGUE_dir); Error in sepia (line 48) sepia_addpath;

what is this direction for ? I read the documentation but this directory was not mentioned . I hope you could help me thanks a lot!

kschan0214 commented 4 years ago

Hi,

Thanks for reporting this! The master branch supports a new phase unwrapping algorithm called SEGUE. If you want to include it in the SEPIA framework, you can download it here, and specify the 'SEGUE_dir', which is the path to the folder containing the SEGUE functions, in the SpecifyToolboxesDirectory.m likes other toolboxes.

I haven't built a fail-safe script for people who don't have SEGUE yet but it will be fixed in the next stable release. For a quick solution of the problem, you can add the following line to the end of the SpecifyToolboxesDirectory.m script: SEGUE_dir = []; In this way, SEPIA will give a warning message about missing SEGUE directory but other than that SEPIA should work fine.

Let me know if this works for you or not.

Kwok

kschan0214 commented 4 years ago

Since there is no more update, I will close this issue.