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kschan0214 / sepia

Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
MIT License
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Question regarding phase unwrapping #70

Closed loneblues closed 8 months ago

loneblues commented 8 months ago

Hello. For phase unwrapping, there is option for mask. I want to ask if the brain mask provided (which is better than default BET), can be used for such purposes. Thanks.

Best, Ho-Joon Lee

kschan0214 commented 8 months ago

Hi Ho-Joon,

Yes, you can specify your own mask on the GUI:

Screenshot 2023-11-01 at 22 23 07

The mask file has to be in the NIFTI format (.nii or .nii.gz).

Let me know if you encounter any issue.

Best,

Kwok