search

ksiewert / BetaScan

Genome-wide scan for balancing selection using beta statistic
27 stars 5 forks source link

Error, missing data in the EPO file #13

Closed jaesoonpark closed 2 years ago

jaesoonpark commented 2 years ago

Hello.

I have an issue with calling ancestral alleles.

The command line was same as the tutorial: glactools vcfm2acf --onlyGT --epo all.epo.gz --fai human_g1k_v37.fasta.fai test.vcf > test.acf.gz

The error message was Error, missing data in the EPO file

Could you explain what this means?

Thanks.

ksiewert commented 2 years ago

Hello, I would talk to Gabriel, the creator of glactools package, about this error. I'm on maternity leave so can't provide assistance right now, and he's probably the best person to talk to regardless.

Best, Katie