Closed HengLiang1993 closed 1 year ago
Hello. Sorry for the delayed response. If you wouldn't mind posting a screenshot of your input file around this genomic position, as well as a screenshot of the results file, that would be helpful.
Hi My input file is; zcat output.beta.txt.gz | head 315639 152 308 315663 18 330 315677 6 338 315681 162 338 315685 4 338 315686 8 338 315689 14 342 315690 1 344 315705 2 348 315715 1 350
Hello. Only Beta1_std should be outputted when the -onewin command is used (see the explanation of the -onewin command here). However, there's a small bug that is causing the header to also contain Beta1, making it look like it should be a 3 column output file. I'm planning to release a new version of BetaScan soon in python3, and will fix this then. Thanks for catching this!
This issue should be corrected in the newest release. Let me know if you run into any issues with it.
Hi I run the code: python2 BetaScan.py -i output.beta.txt.gz -onewin -std -theta 0.157 -fold -o betascores-std.txt, and the result show as: Position Beta1 Beta1_std 315639.0 -0.761294 315663.0 0.829734 315677.0 1.213546 315681.0 -0.746679 315685.0 1.253881 315686.0 1.159774 315689.0 0.97459 315690.0 1.25847 315705.0 1.256603 315715.0 1.249427 315725.0 -0.893911 315740.0 0.600665 315953.0 1.309721 316007.0 -0.764854 316008.0 1.27593
The value of Beta1_std is miss.Only show the value of Beta1.
Best
Heng