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ksiewert / BetaScan

Genome-wide scan for balancing selection using beta statistic
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TypeError: a float is required #6

Closed coopergrace closed 4 years ago

coopergrace commented 4 years ago

Hi Katie,

I'm having a problem with running BetaScan. My command is:

python BetaScan.py -i snps.beta.txt.gz -fold -o out.betascores.txt

and the error I'm receiving:

Traceback (most recent call last): File "BetaScan.py", line 613, in <module> main() File "BetaScan.py", line 602, in main output.write(str(loc)+"\t"+str(round(B,6))+"\n") #Remove thetas TypeError: a float is required

I'm using Python 2.7.17. I'd appreciate any suggestions you have please.

Cheers

ksiewert commented 4 years ago

Hello! Sorry for the delay. Github wasn't e-mailing me when people posted github issues, so I missed this. Without more information, it's hard to figure out what could be causing this. If it's still an issue, could you send me a subset of snps.beta.txt.gz that causes this issue, or add the following right before line 602 in the code and tell me what it outputs:

print loc
print B  
print type(loc)  
print type(B)
xinhan2023 commented 1 month ago

-w. You can increase this score