ksiewert
commented
3 years ago Hi Josie,
Yes, no problem! In the top panel on this page there's an example: https://github.com/ksiewert/BetaScan/wiki/Input-Format. The SNPs where the value of the 2nd column equals that of the 3rd are the substitutions. Let me know if this doesn't answer your question.
Best, Katie
From: Josie Paris notifications@github.com Sent: Thursday, February 18, 2021 1:29 PM To: ksiewert/BetaScan BetaScan@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [ksiewert/BetaScan] substitution data input format (#8)
Hey Katie,
Are you able to provide an example of the input file required for calculating B2? I'm generating the input files myself as I'm unable to use glactools (I'm using a non-model and the ancestral alleles have been called in a kinda homebrew way - i.e. are not in an epo file)
Thank you!
Josie
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josieparis
Hey Katie,
Are you able to provide an example of the input file required for calculating B2? I'm generating the input files myself as I'm unable to use glactools (I'm using a non-model and the ancestral alleles have been called in a kinda homebrew way - i.e. are not in an epo file)
Thank you!
Josie