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kspham / rnavariantcalling

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rs_id #11

Open kspham opened 8 years ago

kspham commented 8 years ago

It turns out that RSID has real problems, can you turn off the part that convert rs_id in the pipeline? Thanks.

ptdtan commented 8 years ago 
                                                                                  What's the problem thay?                                                                                                                                                                                                                                                                                                                                          Sent from my BlackBerry 10 smartphone.                                                                                                                                                                                                                From: Son PhamSent: 14:42 Thứ năm, ngày 10 tháng mười hai năm 2015To: kspham/rnavariantcallingReply To: kspham/rnavariantcallingSubject: [rnavariantcalling] rs_id (#11)It turns out that RSID has real problems, can you turn off the part that convert rs_id in the pipeline?

Thanks.

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kspham commented 8 years ago

turned out that there are multiple rs_ids that can map to a location, and also a rs_id can map to multiple places....

On Thu, Dec 10, 2015 at 12:49 AM, Phan Thai Duy Tan < notifications@github.com> wrote:

What's the problem thay? Sent from my BlackBerry 10 smartphone. From: Son PhamSent: 14:42 Thứ năm, ngày 10 tháng mười hai năm 2015To: kspham/rnavariantcallingReply To: kspham/rnavariantcallingSubject: [rnavariantcalling] rs_id (#11)It turns out that RSID has real problems, can you turn off the part that convert rs_id in the pipeline? Thanks.

—Reply to this email directly or view it on GitHub.

— Reply to this email directly or view it on GitHub https://github.com/kspham/rnavariantcalling/issues/11#issuecomment-163535893 .

ptdtan commented 8 years ago 
                                                                                  OK. I got that problem on dbSNP manual recently. I ‎will remove that step in the pipeline. But, how to improve this annotation process, thay                                                                                                                                                                                                                                                                                                                                        Sent from my BlackBerry 10 smartphone.                                                                                                                                                                                                                From: Son PhamSent: 15:52 Thứ năm, ngày 10 tháng mười hai năm 2015To: kspham/rnavariantcallingReply To: kspham/rnavariantcallingCc: Phan Thai Duy TanSubject: Re: [rnavariantcalling] rs_id (#11)turned out that there are multiple rs_ids that can map to a location, and

also a rs_id can map to multiple places....

On Thu, Dec 10, 2015 at 12:49 AM, Phan Thai Duy Tan < notifications@github.com> wrote:

What's the problem thay? Sent from my BlackBerry 10 smartphone. From: Son PhamSent: 14:42 Thứ năm, ngày 10 tháng mười hai năm 2015To: kspham/rnavariantcallingReply To: kspham/rnavariantcallingSubject: [rnavariantcalling] rs_id (#11)It turns out that RSID has real problems, can you turn off the part that convert rs_id in the pipeline? Thanks.

—Reply to this email directly or view it on GitHub.

— Reply to this email directly or view it on GitHub https://github.com/kspham/rnavariantcalling/issues/11#issuecomment-163535893 .

—Reply to this email directly or view it on GitHub.