kstierhoff / estimATM

A tool for planning, execution, analysis, and reporting of CPS biomass from surveys using the acoustic-trawl method (ATM)
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Change handling of catch data (clf) used to apportion backscatter in the nearshore survey #96

Closed kstierhoff closed 10 months ago

kstierhoff commented 10 months ago

Presently, estimateNearshore uses the catch-length-frequency (clf) object from the core survey area to apportion backscatter in the nearshore region by default, and adds clf.seine if use.seine.data = TRUE. Given the differences in sampling times during 2307RL, clf and clf.seine should be combined, and then clusters/hauls should be removed if !sample.type %in% catch.source.ns.

kstierhoff commented 10 months ago

Task completed.