Presently, estimateNearshore uses the catch-length-frequency (clf) object from the core survey area to apportion backscatter in the nearshore region by default, and adds clf.seine if use.seine.data = TRUE. Given the differences in sampling times during 2307RL, clf and clf.seine should be combined, and then clusters/hauls should be removed if !sample.type %in% catch.source.ns.
[x] create clf.ns and hlf.ns to replace the use of clf in estimateNearshore
Presently,
estimateNearshore
uses the catch-length-frequency (clf
) object from the core survey area to apportion backscatter in the nearshore region by default, and addsclf.seine
ifuse.seine.data = TRUE
. Given the differences in sampling times during 2307RL,clf
andclf.seine
should be combined, and then clusters/hauls should be removed if!sample.type %in% catch.source.ns
.clf.ns
andhlf.ns
to replace the use of clf in estimateNearshorelf.final.ns
sample.type %in% catch.source.ns
super.clusters.ns
andsuper.hauls.ns