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kstreet13 / bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq
https://kstreet13.github.io/bioc2020trajectories/
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slingshot inferred 2 lineage using umap but one using pca or harmony #3

Closed FADHLyemen closed 2 years ago

FADHLyemen commented 2 years ago

Hi, When I use pca in slingshot function, 1 lineage was predicted, when I use umap, slingshot inferred two lineages. which one is correct?

kstreet13 commented 2 years ago

Please do not post the same question multiple times. https://github.com/kstreet13/slingshot/issues/167#issue-1084349137