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kstreet13 / bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq
https://kstreet13.github.io/bioc2020trajectories/
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Trajectory Inference and Differential progression #6

Open abulislam opened 11 months ago

abulislam commented 11 months ago

Hi,

I am following the workshop tutorial here:

https://kstreet13.github.io/bioc2020trajectories/articles/workshopTrajectories.html#final-notes-1

I have two conditions. However, I do not know how to plot Figure3 & Figure 4

Trajectory Inference Differential progression

Would you be kind enough to share the code to plot these figures.

May thanks,

HectorRDB commented 11 months ago

Hi, You can find the code in the vignette in the Rmd format here https://github.com/kstreet13/bioc2020trajectories/blob/master/vignettes/workshopTrajectories.Rmd