Closed Ztxfrhhyy closed 1 month ago
Hi @Ztxfrhhyy,
This is a duplicate of this issue: https://github.com/kstreet13/slingshot/issues/221
I would recommend updating to the latest R version and re-installing the relevant packages.
Also, useNames
is not a valid argument for slingshot
, so adding that won't change anything.
Best, Kelly
I would like to use slingshot for a seurat obj but run into an error. Here's my code and error message:
sds <- slingshot(Embeddings(data, "umap"), clusterLabels = data$seurat_clusters,
It worked several weeks ago as: sds <- slingshot(Embeddings(data, "umap"), clusterLabels = data$seurat_clusters,
But now even I add the useNames=TRUE/FALSE, it won't work. Could anybody help? Thanks!