Yet another patch for the genome table issue. This one should allow for both internal and external genome tables, and includes tests to check if things break.
PR checklist
[x] This comment contains a description of changes (with reason).
[x] If you've fixed a bug or added code that should be tested, add tests!
[na] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
[x] Make sure your code lints (nf-core lint).
[x] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
[na] Usage Documentation in docs/usage.rst is updated.
[na] Output Documentation in docs/output.rst is updated.
[x] CHANGELOG.md is updated.
[na] README.md is updated (including new tool citations and authors/contributors).
Yet another patch for the genome table issue. This one should allow for both internal and external genome tables, and includes tests to check if things break.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.rst
is updated.docs/output.rst
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).