Closed MillironX closed 1 year ago
Add gene annotations to variant calls and a subsequent table to the Visualizer.
We will likely need to pull GenBank files for references, then create a database via SnpEff and add annotations via SnpEff
Instead of outputting directly from CliqueSNV/HapLink, send the VCF files through SnpEff, and then output the annotated VCF files into the variants subdirectory.
variants
Add a variants table similar to that from Juergen.
Summary
Add gene annotations to variant calls and a subsequent table to the Visualizer.
Added Features
Additional processes
We will likely need to pull GenBank files for references, then create a database via SnpEff and add annotations via SnpEff
Additional output
Instead of outputting directly from CliqueSNV/HapLink, send the VCF files through SnpEff, and then output the annotated VCF files into the
variantssubdirectory.Additional visualizer section
Add a variants table similar to that from Juergen.