This request updates YAVSAP to match nf-core template v1.4.0. This update is pretty big, and also had some scope creep, so it also contains an update to the Visualizer making it be handled entirely by MultiQC.
Fixes #41
Fixes #43
Fixes #28
PR checklist
[x] This comment contains a description of changes (with reason).
[x] If you've fixed a bug or added code that should be tested, add tests!
[x] If you've added a new tool - have you followed the pipeline conventions
in the
contribution docs
[x] Make sure your code lints (nf-core lint).
[x] Ensure the test suite passes
(nextflow run . -profile test,docker --outdir <OUTDIR>).
[x] Usage Documentation in docs/usage.md is updated.
[x] Output Documentation in docs/output.md is updated.
[x] CHANGELOG.md is updated.
[x] README.md is updated (including new tool citations and
authors/contributors).
This request updates YAVSAP to match nf-core template v1.4.0. This update is pretty big, and also had some scope creep, so it also contains an update to the Visualizer making it be handled entirely by MultiQC.
Fixes #41 Fixes #43 Fixes #28
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).