Adds multi-stranded viral genome support to YAVSAP, along with a set of Rift Valley Fever Virus genome presets to test it with. :tada: This has been a long time coming.
Fixes #25
PR checklist
[x] This comment contains a description of changes (with reason).
[ ] If you've fixed a bug or added code that should be tested, add tests!
[ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
[ ] If necessary, also make a PR on the yavsap branch on the ksumngs/nf-test-datasets repository.
[x] Make sure your code lints (nf-core lint).
[x] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
[x] Usage Documentation in docs/usage.md is updated.
[x] Output Documentation in docs/output.md is updated.
[x] CHANGELOG.md is updated.
[x] README.md is updated (including new tool citations and authors/contributors).
Adds multi-stranded viral genome support to YAVSAP, along with a set of Rift Valley Fever Virus genome presets to test it with. :tada: This has been a long time coming.
Fixes #25
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).