This is because I use samples present in the nextclade output but missing from sc2rf output to define "negatives". This is actually the slowest part of the sc2rf/postprocessing.py script. Instead, maybe I should pass the input metadata and parse that instead.
This is because I use samples present in the
nextcladeoutput but missing fromsc2rfoutput to define "negatives". This is actually the slowest part of thesc2rf/postprocessing.pyscript. Instead, maybe I should pass the input metadata and parse that instead.