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ktmeaton / ncov-recombinant

Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
MIT License
18 stars 2 forks source link

GISAID Data for GitHub Continuous Integration #154

Closed ktmeaton closed 1 year ago

ktmeaton commented 1 year ago

I'm looking for a way to use the strains listed in data/controls-gisaid/strains.txt as input for GitHub CI. Some options I'm considering:

  1. Store the metadata and sequences as encrypted secrets in this repository.

    I will reread the GISAID terms and conditions to see if this is eligible.

    GitHub uses a libsodium sealed box to help ensure that secrets are encrypted before they reach GitHub and remain encrypted until you use them in a workflow.

ktmeaton commented 1 year ago

GitHub secrets are limited to 64 kb in size.

ktmeaton commented 1 year ago

Closing for now, unless another optional becomes available.