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ktmeaton / ncov-recombinant

Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
MIT License
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Reduce sc2rf --max-intermission-length to 2 #158

Closed ktmeaton closed 1 year ago

ktmeaton commented 1 year ago

Change the parameter --max-intermission-length from 3 to 2 for all sc2rf modes.

This corresponds with Issue #79 where a minimum number of 3 consecutive alleles is sufficient support for a parental region.