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ktmeaton / ncov-recombinant

Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
MIT License
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requests.exceptions.ConnectionError: HTTPSConnectionPool(host='lapis.cov-spectrum.org'): Max retries exceeded with url #202

Closed ktmeaton closed 1 year ago

ktmeaton commented 1 year ago

Connection errors may be observed when the LAPIS API is overwhelmed, particularly if multiple builds are running simultaneously. This can be usually be fixed by:

  1. Manually rerunning the pipeline.

  2. Setting snakemake to automatically retry failed jobs in my_profiles/PROFILE/config.yaml:

    restart-times: 1

  3. Disabling the LAPIS API section of the pipeline. See Issue #201 for more details.