Closed ktmeaton closed 1 year ago
Clade: Omicron/BA.2.10,Omicron/BA.2.75/22D Lineage: BA.2*,BA.2* Lineage Confidence: 0.136,0.211
Omicron/BA.2.10
Omicron/BA.2.75/22D
BA.2*
0.136
0.211
RBD Level: 7 RBD Substitutions: S:R346T,S:V445P,S:G446S,S:N460K,S:F486P,S:F490S,S:R493Q Immune Escape: 0.9070 ACE2 Binding: 1.0124
7
S:R346T
S:V445P
S:G446S
S:N460K
S:F486P
S:F490S
S:R493Q
0.9070
1.0124
Higher values indicate an increased capacity to evade antibodies.
TBD
Higher values indicate an increased capacity for viral entry into the host cell.
XBB.1.5 is successfully detected with the sc2rf mode for XBB:
XBB.1.5
sc2rf
XBB
Note: The Ns near the breakpoints are handled from XBB-like ARTIC v4.1 Dropout
N
Breakpoint 1: 22332:22576
22332:22576
Or alternatively, 22191:22576 when ARTIC dropout occurs.
22191:22576
resources/breakpoints.tsv
Parents
Clade:
Omicron/BA.2.10,Omicron/BA.2.75/22DLineage:BA.2*,BA.2*Lineage Confidence:0.136,0.211Immunity
RBD Level:
7RBD Substitutions:S:R346T,S:V445P,S:G446S,S:N460K,S:F486P,S:F490S,S:R493QImmune Escape:0.9070ACE2 Binding:1.0124Immune Escape Ranking
TBD
ACE2 Binding Ranking
TBD
Alleles
XBB.1.5is successfully detected with thesc2rfmode forXBB:Breakpoints
Breakpoint 1:
22332:22576Or alternatively,
22191:22576when ARTIC dropout occurs.Tasks
resources/breakpoints.tsvUpdated