Missing `latent_vars` for `FindAllMarkers` if samples are integrated

ktrns / scrnaseq

Workflow for single-cell RNA-seq analysis using Seurat

MIT License

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Closed ktrns closed 2 years ago

ktrns commented 3 years ago

If we apply integration of multiple samples, we need to add orig_ident to param$latent_vars. Question is, what do we do for DEGs?