Read and plot known marker genes from file

ktrns / scrnaseq

Workflow for single-cell RNA-seq analysis using Seurat

MIT License

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Closed ktrns closed 4 years ago

ktrns commented 4 years ago

Read known marker genes from file and plot them as average and individually, closed issue #21
Added option to define Ensembl version and specify identifiers for Ensembl, symbol and Entrez. This allows to use the same version that was used for CellRanger.
Improved documentation in the report
Fixed dimensionality mismatch between RNA and SCT assay
Added tabs, closed issue #14
Fixed Loupe export

andpet0101 commented 4 years ago

Can be merged.

ktrns commented 4 years ago

Can be merged.

Thanks for the review. I will re-run the script with min_cells=3, commit again, and merge.