(Re)Integration of the violin plots

ktrns / scrnaseq

Workflow for single-cell RNA-seq analysis using Seurat

MIT License

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(Re)Integration of the violin plots #40

Closed Oliver-D-B closed 4 years ago

Oliver-D-B commented 4 years ago

The “violin plots” as examples for marker genes of individual clusters are extremely valuable and do show aspects of the data that no other panel is able to. Thus, they should still be (re-)integrated into the standard report (as we have already realized in a recently ‘launched’ RCUG-specific version of the script/report).

ktrns commented 4 years ago

Hi again,

What would you say is a violin plot showing that a ridge plot wouldn't? We could add a fifth tab for showing a violin plot for the top gene per cluster? That would be no problem at all. You could also send me a screenshot how you guys solved it for now.

Thanks again, Katrin

Oliver-D-B commented 4 years ago

Hi Katrin,

I tried to show some good argumets for the violin plot, best regards, Oliver

(Re)Integration of the violin plots #40_ODB.pptx

tglomb commented 4 years ago

Hi everybody,
I just wanna let you know that I'm going to reintegrate the violin plots.

Best Torsten