Would be great to convert the final Seurat object to h5ad such that it can be visualized with cellxgene. This could just go next to the exports for Loupe and Cerebro. I would suggest to use sceasy for this (https://github.com/cellgeni/sceasy), this would add a dependency. Code would be something like:
Would be great to convert the final Seurat object to h5ad such that it can be visualized with cellxgene. This could just go next to the exports for Loupe and Cerebro. I would suggest to use sceasy for this (https://github.com/cellgeni/sceasy), this would add a dependency. Code would be something like: