ktrns / scrnaseq

Workflow for single-cell RNA-seq analysis using Seurat
MIT License
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Loupe export with hashtags #82

Closed andpet0101 closed 3 years ago

andpet0101 commented 3 years ago

At the moment export to Loupe will not work for samples originating from hashtags. In the original Loupe file, all cells have a -1 suffix. But when we split by hash tag and then read, we add a -1, -2, -3.

We may have to think about a column in path_data where we explicitly state -1, -2 etc