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ktrns / scrnaseq

Workflow for single-cell RNA-seq analysis using Seurat
MIT License
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Excluding genes only if they are to be excluded in all samples #88

Closed ktrns closed 3 years ago

ktrns commented 3 years ago

If a gene is excluded in 2 out of 3 samples, because it is not expressed in at least N number of cells, it remains in the merged dataset but gets 0 counts.

I find that confusing and will change the way we filter genes, so that we exclude genes only if they are to be excluded in all samples.