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ku-cbd / PhageBoost

Rapid discovery of novel prophages using biological feature engineering and machine learning
GNU General Public License v3.0
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AttributeError: 'ProteinAnalysis' object has no attribute 'molar_extinction_coefficient' #25

Open SamuelGreenrod opened 2 years ago

SamuelGreenrod commented 2 years ago

Hi there,

I'm trying to run PhageBoost but keep getting the error message: AttributeError: 'ProteinAnalysis' object has no attribute 'molar_extinction_coefficient'. Please could you help me try to figure out where this is going wrong? I'm running the code:

conda create -y -n PhageBoost-env python=3.7 conda activate PhageBoost-env pip install git+https://github.com/ku-cbd/PhageBoost PhageBoost -f file.fna -o results

Thanks!

SamuelGreenrod commented 2 years ago

Update: I am getting this same error message with the following code:

conda create -y -n PhageBoost-env python=3.7 conda activate PhageBoost-env git clone https://github.com/ku-cbd/PhageBoost cd PhageBoost python setup.py bdist_wheel pip install --user . PhageBoost -f example/data/NC_000907.fasta.gz -o results

Thanks.