kuanrongchan / STAGES

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No option to select sheets in FIle Uploader #23

Open mshekibi opened 5 months ago

mshekibi commented 5 months ago

When I upload my file at File Uploader (specifically for RNA Counts), there's no option for me to select which sheet to read. However when I upload the metadata file, it allows me to select a sheet.

Since I can't select which sheet to read in my RNA counts file, none of my data is read and I can't progress any further with the platform. I've been checking every week for a few weeks to see if it would resolve itself but nothing has changed.

kuanrongchan commented 5 months ago

Hi:

Sincere apologies if our webtool has caused any inconvenience. Have you tried uploading them individually, instead of as multiple sheets? Another option that will be quicker would be to convert your file as .csv for the webtool to read. Hope it helps.

Best regards Kuan Rong

Chan Kuan Rong, PhD | Senior Principal Research Scientist, Emerging Infectious Diseases | Duke-NUS Medical School | Tel: 65 90058277 | 8 College Road, Singapore 169857 | kuanrongchan.comhttp://kuanrongchan.com


From: mshekibi @.> Sent: Monday, May 6, 2024 4:54 AM To: kuanrongchan/STAGES @.> Cc: Subscribed @.***> Subject: [kuanrongchan/STAGES] No option to select sheets in FIle Uploader (Issue #23)

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When I upload my file at File Uploader (specifically for RNA Counts), there's no option for me to select which sheet to read. However when I upload the metadata file, it allows me to select a sheet.

Since I can't select which sheet to read in my RNA counts file, none of my data is read and I can't progress any further with the platform. I've been checking every week for a few weeks to see if it would resolve itself but nothing has changed.

— Reply to this email directly, view it on GitHubhttps://ddec1-0-en-ctp.trendmicro.com:443/wis/clicktime/v1/query?url=https%3a%2f%2fgithub.com%2fkuanrongchan%2fSTAGES%2fissues%2f23&umid=27ef6b72-3602-41e9-995e-f27d5de6be50&auth=3eee6d57317a38631073652579c10dc620ca2b41-da33bb5307e0f565a37a07a890c888df80d1c75e, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AVYMKCLKRF7HM5V5F3RU7JDZA2L6ZAVCNFSM6AAAAABHIAOSOCVHI2DSMVQWIX3LMV43ASLTON2WKOZSGI3TSNZSGY2TQOI. You are receiving this because you are subscribed to this thread.Message ID: @.***>


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mshekibi commented 5 months ago

Thanks for getting back to me so quickly! I have tried uploading them individually but I ran into the same issue. I'll try converting them to .csv files and see if that works.

mshekibi commented 5 months ago

I converted the data files into .csv files (making sure I only had one sheet with relevant data) and uploaded them to File Uploader but nothing happened. I also tried opening STAGEs on different web browsers to see if that would make a difference but I'm running into the same issue as before.

kuanrongchan commented 5 months ago

Hi:

Mind sharing with us your data file and see if we can troubleshoot for you?

Best Kuan Rong

Chan Kuan Rong, PhD | Senior Principal Research Scientist, Emerging Infectious Diseases | Duke-NUS Medical School | Tel: 65 90058277 | 8 College Road, Singapore 169857 | kuanrongchan.comhttp://kuanrongchan.com


From: mshekibi @.> Sent: Tuesday, May 7, 2024 11:21 AM To: kuanrongchan/STAGES @.> Cc: Chan Kuan Rong @.>; Comment @.> Subject: Re: [kuanrongchan/STAGES] No option to select sheets in FIle Uploader (Issue #23)

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I converted the data files into .csv files (making sure I only had one sheet with relevant data) and uploaded them to File Uploader but nothing happened. I also tried opening STAGEs on different web browsers to see if that would make a difference but I'm running into the same issue as before.

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mshekibi commented 5 months ago

Unfortunately I can't share this data at the moment, otherwise I would have been happy to send you the files. Do you have any suggestions on other ways I can troubleshoot from my end?

kuanrongchan commented 5 months ago

Did you manage to try the demo dataset and see if it works on your end?

Chan Kuan Rong, PhD | Senior Principal Research Scientist, Emerging Infectious Diseases | Duke-NUS Medical School | Tel: 65 90058277 | 8 College Road, Singapore 169857 | kuanrongchan.comhttp://kuanrongchan.com


From: mshekibi @.> Sent: Wednesday, May 8, 2024 8:16 AM To: kuanrongchan/STAGES @.> Cc: Chan Kuan Rong @.>; Comment @.> Subject: Re: [kuanrongchan/STAGES] No option to select sheets in FIle Uploader (Issue #23)

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Unfortunately I can't share this data at the moment, otherwise I would have been happy to send you the files. Do you have any suggestions on other ways I can troubleshoot from my end?

— Reply to this email directly, view it on GitHubhttps://ddec1-0-en-ctp.trendmicro.com:443/wis/clicktime/v1/query?url=https%3a%2f%2fgithub.com%2fkuanrongchan%2fSTAGES%2fissues%2f23%23issuecomment%2d2099509038&umid=0124b694-481a-4e8b-ad9b-41255563ad55&auth=3eee6d57317a38631073652579c10dc620ca2b41-01b4b45bf9022407f0a5ab124d01a974e3c9554f, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AVYMKCJQHP4SLQEJCNOWM7LZBFVGBAVCNFSM6AAAAABHIAOSOCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAOJZGUYDSMBTHA. You are receiving this because you commented.Message ID: @.***>


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mshekibi commented 5 months ago

I did try the demo dataset and it worked fine. The issue seems to be anything I upload to the platform.

I forgot to mention but should clarify, I have used STAGEs previously and had no issues with other datasets but unfortunately I can't pinpoint what's changed.

kuanrongchan commented 5 months ago

Can you try downloading the demo data and then try the file uploader to see if it works on your side? Thanks 🙂

Chan Kuan Rong, PhD | Senior Principal Research Scientist, Emerging Infectious Diseases | Duke-NUS Medical School | Tel: 65 90058277 | 8 College Road, Singapore 169857 | kuanrongchan.comhttp://kuanrongchan.com


From: mshekibi @.> Sent: Wednesday, May 8, 2024 10:13 AM To: kuanrongchan/STAGES @.> Cc: Chan Kuan Rong @.>; Comment @.> Subject: Re: [kuanrongchan/STAGES] No option to select sheets in FIle Uploader (Issue #23)

    - External Email -

I did try the demo dataset and it worked fine. The issue seems to be anything I upload to the platform.

I forgot to mention but should clarify, I have used STAGEs previously and had no issues with other datasets but unfortunately I can't pinpoint what's changed.

— Reply to this email directly, view it on GitHubhttps://ddec1-0-en-ctp.trendmicro.com:443/wis/clicktime/v1/query?url=https%3a%2f%2fgithub.com%2fkuanrongchan%2fSTAGES%2fissues%2f23%23issuecomment%2d2099605742&umid=44c50c7c-3cd6-48af-aee6-40fc8737af09&auth=3eee6d57317a38631073652579c10dc620ca2b41-1a17a4ea4776c1c6bf8cf04257f5b70fde9dc55d, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AVYMKCML2N7QN52KK4WL643ZBGC4RAVCNFSM6AAAAABHIAOSOCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAOJZGYYDKNZUGI. You are receiving this because you commented.Message ID: @.***>


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mshekibi commented 4 months ago

Sorry for the delayed response! I did try it that way and it still didn't work unfortunately. I'm going to try it on another computer, if it's just my computer which is causing the issue. I'll send an update if that resolves the issue.