Nb3010
commented
2 years ago The issue is related to the hhsuite package, apparently there is a channel missing (see below). I solved it by splitting up the command like:
conda install -y -c bioconda hmmer conda install -y -c conda-forge -c hhsuite==3.3.0 conda install -y -c bioconda kalign2
at least I could install it step by step that way. Hope that helps!
Dear All, I am trying to install the software on my system (ubuntu) and when I execute the script for installing the software (install_on_local.sh) I get following error; """ Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package _openmp_mutex conflicts for: hhsuite==3.3.0 -> _openmp_mutex[version='>=4.5'] python=3.7 -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5'] kalign2 -> libgcc-ng[version='>=9.3.0'] -> _openmp_mutex[version='>=4.5'] hmmer -> libgcc-ng[version='>=9.3.0'] -> _openmp_mutex[version='>=4.5']
Package libstdcxx-ng conflicts for: python=3.7 -> libstdcxx-ng[version='>=7.2.0|>=7.3.0'] hmmer -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0'] hhsuite==3.3.0 -> libstdcxx-ng[version='>=7.5.0|>=9.3.0'] hhsuite==3.3.0 -> python[version='>=3.9,<3.10.0a0'] -> libstdcxx-ng[version='>=7.2.0|>=7.3.0']
Package libgcc-ng conflicts for: hhsuite==3.3.0 -> perl[version='>=5.26.2,<5.26.3.0a0'] -> libgcc-ng[version='>=7.2.0|>=7.3.0'] hhsuite==3.3.0 -> libgcc-ng[version='>=7.5.0|>=9.3.0']The following specifications were found to be incompatible with your system:
Your installed version is: 2.31
Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: - Found conflicts! Looking for incompatible packages. """ I mostly appreciate to suggest me what the issue comes from and how I can solve it? Thanks so much Maryam