Closed aakrosh closed 6 years ago
There are some entries in the VCF that are malformed. For example
chr3 133238266 1856 N . PASS SVTYPE=DEL;END=133238476;SVLEN=--35;CIPOS=0,1;CIEND=-1,0;CM=DEL;SUPPORT=4;PRECISE
SVLEN has a '--' which is unexpected.
There are some entries in the VCF that are malformed. For example
chr3 133238266 1856 N
. PASS SVTYPE=DEL;END=133238476;SVLEN=--35;CIPOS=0,1;CIEND=-1,0;CM=DEL;SUPPORT=4;PRECISESVLEN has a '--' which is unexpected.