kundajelab 3DChromatin_ReplicateQC issues

kundajelab / 3DChromatin_ReplicateQC

Software to compute reproducibility and quality scores for Hi-C data

MIT License

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issues

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low BR similarity scores for HiC-Spector

#20 X3N1A opened 9 months ago
0
can't run concordance

#19 liuyizhuooo closed 1 year ago
0
prep function deprecated in the latest HiCRep version

#18 eternalding opened 3 years ago
2
installing error: Couldn't find index page for 'setuptools_cython' (maybe misspelled?)

#17 YiweiNiu closed 3 years ago
2
The format of my input files are the same as your example files, but it can't run.

#16 HappyLife-together opened 3 years ago
5
cannot install HiCRep

#15 chesi opened 4 years ago
1
ValueError when running 3DChromatin_ReplicateQC concordance

#14 Spiridempt opened 5 years ago
2
Potential issue in wrappers/QuASAR/data_to_hifive.py

#13 henrybzhang opened 5 years ago
3
Contact map and bins

#12 wyim-pgl opened 5 years ago
0
HiC-Spector

#11 Phlya opened 5 years ago
3
Rscript: command not found

#10 Phlya opened 5 years ago
1
QuASAR-QC output folder

#9 Phlya opened 5 years ago
3
Support cooler files

#8 Phlya opened 5 years ago
1
Summary tables not created when HiRep gives NaN back

#7 cgirardot closed 5 years ago
2
Suggestions to improve the installation

#6 cgirardot opened 6 years ago
2
Update to final QuASAR version and fix minor data loading bug

#5 msauria closed 7 years ago
0
AttributeError when running example script

#4 stayingsong closed 6 years ago
8
KeyError: "Unable to open object (Object 'dist.1.1000000' doesn't exist)"

#3 jstansfield0 closed 6 years ago
3
Problems installing

#2 jstansfield0 closed 7 years ago
10
Create LICENSE

#1 oursu closed 7 years ago
0