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Model Comparison -- Total differential genes by task #2

Open annashcherbina opened 7 years ago

annashcherbina commented 7 years ago
MODEL GeneSet Direction earlyg1_dmso_control earlyg1_sg2m_dmso lateg1_earlyg1_control sg2m_dmso_control sg2m_lateg1_dmso earlyg1_sg2m_control lateg1_dmso_control lateg1_earlyg1_dmso sg2m_lateg1_control
DESEQ2:Model+exp(SVASEQ) cell_adhesion down 0 0 0 0 0 0 0 0 0
DESEQ2:Model+SVASEQ cell_adhesion down 0 0 0 0 0 0 0 0 0
LIMMA:Model+exp(SVASEQ) cell_adhesion down 0 0 0 0 0 0 0 0 0
LIMMA:Model+SVASEQ cell_adhesion down 0 0 0 0 0 0 0 0 0
LIMMA(asinh(TPM)-exp(SVA)) cell_adhesion down 0 1 0 0 1 1 0 0 1
LIMMA(asinh(TPM)-SVA):Model cell_adhesion down 0 1 0 0 1 1 0 0 1
LIMMA(asinh(TPM)):Model+exp(SVA) cell_adhesion down 0 0 0 0 0 0 0 0 0
LIMMA(asinh(TPM)):Model+SVA cell_adhesion down 0 0 0 0 0 0 0 0 0
DESEQ2:Model+exp(SVASEQ) cell_adhesion up 1 0 0 3 0 0 2 0 0
DESEQ2:Model+SVASEQ cell_adhesion up 1 0 0 3 0 0 2 0 0
LIMMA:Model+exp(SVASEQ) cell_adhesion up 0 0 0 0 0 0 0 0 0
LIMMA:Model+SVASEQ cell_adhesion up 0 0 0 0 0 0 0 0 0
LIMMA(asinh(TPM)-exp(SVA)) cell_adhesion up 7 0 0 10 0 0 10 0 1
LIMMA(asinh(TPM)-SVA):Model cell_adhesion up 6 0 0 10 0 0 10 1 1
LIMMA(asinh(TPM)):Model+exp(SVA) cell_adhesion up 0 0 0 0 0 0 0 0 0
LIMMA(asinh(TPM)):Model+SVA cell_adhesion up 0 0 0 0 0 0 0 0 0
DESEQ2:Model+exp(SVASEQ) differentiation down 2 0 0 0 0 0 3 0 0
DESEQ2:Model+SVASEQ differentiation down 2 0 0 0 0 0 3 0 0
LIMMA:Model+exp(SVASEQ) differentiation down 3 0 0 0 0 0 1 0 0
LIMMA:Model+SVASEQ differentiation down 3 0 0 0 0 0 1 0 0
LIMMA(asinh(TPM)-exp(SVA)) differentiation down 3 0 0 0 0 0 4 0 0
LIMMA(asinh(TPM)-SVA):Model differentiation down 3 0 0 0 0 0 4 2 0
LIMMA(asinh(TPM)):Model+exp(SVA) differentiation down 0 0 0 0 0 0 0 0 0
LIMMA(asinh(TPM)):Model+SVA differentiation down 0 0 0 0 0 0 1 0 0
DESEQ2:Model+exp(SVASEQ) differentiation up 3 0 0 1 0 0 2 0 0
DESEQ2:Model+SVASEQ differentiation up 3 0 0 1 0 0 3 0 0
LIMMA:Model+exp(SVASEQ) differentiation up 1 0 0 1 0 0 0 0 0
LIMMA:Model+SVASEQ differentiation up 2 0 0 1 0 0 0 0 0
LIMMA(asinh(TPM)-exp(SVA)) differentiation up 1 0 0 1 2 0 0 0 0
LIMMA(asinh(TPM)-SVA):Model differentiation up 1 0 0 1 2 0 0 0 0
LIMMA(asinh(TPM)):Model+exp(SVA) differentiation up 0 0 0 0 0 0 0 0 0
LIMMA(asinh(TPM)):Model+SVA differentiation up 0 0 0 0 0 0 0 0 0
DESEQ2:Model+exp(SVASEQ) total down 90 4 0 81 5 33 204 0 9
DESEQ2:Model+SVASEQ total down 88 4 0 79 5 33 202 0 13
LIMMA:Model+exp(SVASEQ) total down 72 1 0 27 0 1 21 0 0
LIMMA:Model+SVASEQ total down 82 1 0 44 1 11 34 0 0
LIMMA(asinh(TPM)-exp(SVA)) total down 256 43 43 203 367 61 1187 0 156
LIMMA(asinh(TPM)-SVA):Model total down 249 42 42 194 368 59 1154 489 159
LIMMA(asinh(TPM)):Model+exp(SVA) total down 5 9 1 14 82 1 43 28 22
LIMMA(asinh(TPM)):Model+SVA total down 7 3 3 16 85 4 73 31 55
DESEQ2:Model+exp(SVASEQ) total up 149 3 0 157 32 1 239 1 40
DESEQ2:Model+SVASEQ total up 148 3 0 160 32 1 242 1 41
LIMMA:Model+exp(SVASEQ) total up 46 0 0 33 1 0 26 0 0
LIMMA:Model+SVASEQ total up 96 1 0 78 2 4 38 0 0
LIMMA(asinh(TPM)-exp(SVA)) total up 237 48 151 339 674 55 628 0 83
LIMMA(asinh(TPM)-SVA):Model total up 230 50 149 341 660 54 631 347 82
LIMMA(asinh(TPM)):Model+exp(SVA) total up 17 10 20 20 30 0 58 74 5
LIMMA(asinh(TPM)):Model+SVA total up 18 10 47 25 31 1 61 85 9